Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 340061
Gene Symbol: STING1
STING1
0.010 Biomarker disease BEFREE Overproduction of the STING agonist c-di-AMP significantly enhanced the protective efficacy of BCG against pulmonary and extrapulmonary tuberculosis. 30901058 2020
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a diagnostic evaluation study. 30583052 2019
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE The present study establishes Xpert MTB/RIF assay as a promising tool in the rapid diagnosis of EPTB and detection of RIF resistance. 30429387 2019
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a diagnostic evaluation study. 30583052 2019
Entrez Id: 54892
Gene Symbol: NCAPG2
NCAPG2
0.070 Biomarker disease BEFREE Two diagnostic methods (Gene Xpert MTB and culture (LJ and MGIT) were used for EPTB diagnosis. 30654769 2019
Entrez Id: 54892
Gene Symbol: NCAPG2
NCAPG2
0.070 Biomarker disease BEFREE The good field performance of the Abbott RealTime MTB assay makes it valuable for the diagnosis of extrapulmonary tuberculosis in a low-prevalence setting. 31668859 2019
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE The present study establishes Xpert MTB/RIF assay as a promising tool in the rapid diagnosis of EPTB and detection of RIF resistance. 30429387 2019
Entrez Id: 4498
Gene Symbol: MT1JP
MT1JP
0.070 Biomarker disease BEFREE Two diagnostic methods (Gene Xpert MTB and culture (LJ and MGIT) were used for EPTB diagnosis. 30654769 2019
Entrez Id: 4498
Gene Symbol: MT1JP
MT1JP
0.070 Biomarker disease BEFREE The good field performance of the Abbott RealTime MTB assay makes it valuable for the diagnosis of extrapulmonary tuberculosis in a low-prevalence setting. 31668859 2019
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 GeneticVariation disease BEFREE This study was performed to meta-statistically analyze the data and draw a more accurate conclusion regarding the association of IFN-γ +874 A > T gene polymorphism and EPTB susceptibility. 30825502 2019
Entrez Id: 58155
Gene Symbol: PTBP2
PTBP2
0.050 GeneticVariation disease BEFREE Nevertheless, studies describing immune determinants of pulmonary or extrapulmonary TB (PTB or EPTB, respectively) in children are scarce. 31299414 2019
Entrez Id: 5725
Gene Symbol: PTBP1
PTBP1
0.050 GeneticVariation disease BEFREE Nevertheless, studies describing immune determinants of pulmonary or extrapulmonary TB (PTB or EPTB, respectively) in children are scarce. 31299414 2019
Entrez Id: 7097
Gene Symbol: TLR2
TLR2
0.030 GeneticVariation disease BEFREE (3) Stratified by sample type, TLR2 Arg753Gln polymorphism is associated with increased PTB risk, but not with EPTB. 30733958 2019
Entrez Id: 9564
Gene Symbol: BCAR1
BCAR1
0.030 GeneticVariation disease BEFREE URAL2 (NEW-1) (28/88; 31.8%) and CAS1-DELHI (25/84; 29.8%) genotypes were predominant in EPTB and PTB strains, respectively. 30513341 2019
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 Biomarker disease BEFREE At 24 weeks post ATT commencement, markers underlying the observed increases in MDP scores were IL-27 in PTB and IL-1β in EPTB patients. 31226436 2019
Entrez Id: 7421
Gene Symbol: VDR
VDR
0.020 AlteredExpression disease BEFREE If post-treatment VDR expression reflects expression prior to disease, it may identify persons at risk for extrapulmonary TB. 31039752 2019
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.020 Biomarker disease BEFREE We recently detected Mycobacterium tuberculosis lipoarabinomannan (LAM) and CFP-10 (Rv3874) biomarkers from the urinary EVs of pulmonary TB (PTB) and extrapulmonary TB (EPTB) patients by immuno-polymerase chain reaction (I-PCR) assay and the results were compared with the analogous enzyme-linked immunosorbent assay (ELISA). 31549171 2019
Entrez Id: 3553
Gene Symbol: IL1B
IL1B
0.020 Biomarker disease BEFREE Macrophages from persons with previous EPTB had a 38.88 μg/mL increase in median IL-1β production after stimulation with LpqH compared to uninfected contacts (P = 0.01); the effect was similar (44.99 μg/mL) but not statistically significant after controlling for foreign-born status. 31039752 2019
Entrez Id: 22900
Gene Symbol: CARD8
CARD8
0.010 GeneticVariation disease BEFREE There was a significant association between homozygotes in the CARD8 polymorphism and extrapulmonary TB (EPTB), which was not the case for pulmonary TB or HDs. 30816317 2019
Entrez Id: 2069
Gene Symbol: EREG
EREG
0.010 GeneticVariation disease BEFREE Moreover, the rs6446993 polymorphism of the EREG gene was found to be associated with EPTB (P = 0.00087, OR = 1.54; 95% CI = 1.23-1.94). 30634928 2019
Entrez Id: 3929
Gene Symbol: LBP
LBP
0.010 Biomarker disease BEFREE Plasma levels of C-reactive protein, matrix metalloproteinase-7 and lipopolysaccharide-binding protein distinguish active pulmonary or extrapulmonary tuberculosis from uninfected controls in children. 31299414 2019
Entrez Id: 253962
Gene Symbol: CACNA1G-AS1
CACNA1G-AS1
0.010 GeneticVariation disease BEFREE URAL2 (NEW-1) (28/88; 31.8%) and CAS1-DELHI (25/84; 29.8%) genotypes were predominant in EPTB and PTB strains, respectively. 30513341 2019
Entrez Id: 6402
Gene Symbol: SELL
SELL
0.010 Biomarker disease BEFREE Notably, LAM I-PCR revealed sensitivities of 74.3 and 67.9% in PTB (n = 74) and EPTB (n = 53) patients, respectively, with specificities of 91.5-92.8% (n = 116). 31549171 2019
Entrez Id: 406938
Gene Symbol: MIR146A
MIR146A
0.010 Biomarker disease BEFREE Taqman based qRT-PCR analysis of host-genome encoded (hsa-miR-146a-5p and hsa-miR-125b-5p) and MTB genome encoded (MTB-miR5) miRNAs showed increased expression in a cohort of 52 healthy, pulmonary tuberculosis (PTB) and extra pulmonary tuberculosis (EPTB) patients serum samples. 31153517 2019
Entrez Id: 3627
Gene Symbol: CXCL10
CXCL10
0.010 Biomarker disease BEFREE In conclusion, the DPS/DBS IP-10 assay allows for easy and manageable monitoring in low-resource settings and our findings suggest that IP-10 may serve as a biomarker for treatment efficacy in EPTB patients, albeit further studies in cohorts of patients with treatment failure and relapse are needed. 30846768 2019